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Sequence analysis, single-cell RNA-seq, gene regulatory networks, variant data, phylogenetics, and biomedical database lookup.

Cheminformatics, molecular ML featurization, docking, and medicinal chemistry workflows.

LC-MS/MS processing, spectral matching, peptide ID, and glycoengineering.

Clinical decision support, clinical/case/trial reports, treatment plans, and ISO 13485 QMS docs.

EHR/physiological-signal ML: PyHealth pipelines and NeuroKit2 biosignal processing.

DICOM, whole-slide imaging, computational pathology, and NCI Imaging Data Commons.

General ML/DL: scikit-learn, PyTorch Lightning, transformers, RL, time series, GNNs, Bayesian, SHAP, plus GPU and compute helpers.

Materials science with pymatgen and constraint-based metabolic modeling with COBRApy.

Astronomy (astropy), symbolic math (sympy), open quantum systems (qutip), and quantum frameworks (qiskit, cirq, pennylane).

Discrete-event simulation, multi-objective optimization, CFD, and molecular dynamics.

Stats, EDA, network analysis, survival analysis, plotting, big-data dataframes (dask/polars/vaex/zarr), MATLAB, and US fiscal data.

Geospatial science: GIS, remote sensing, spatial stats, and earth-observation ML.

Lab platforms and ELNs: Benchling, DNAnexus, LatchBio, OMERO, Opentrons, protocols.io, PyLabRobot, Ginkgo, LabArchives, plus flow cytometry and Neuropixels.

Lit review, peer review, writing, citations, posters, slides, schematics, infographics, and academic web search. (For docx/pdf/pptx/xlsx, install kdense-document-skills.)

General-purpose document tools: read/write/edit .docx (Word), .pdf, .pptx (PowerPoint), and .xlsx (Excel/spreadsheets). Useful complement to any scientific-writing workflow.

Multi-modal omics integration: DepMap, PrimeKG, and scvi-tools deep generative models.

Protein language models (ESM) and the Adaptyv Bio Foundry API.

Hypothesis generation, grant writing, brainstorming, critical-thinking eval, scenario analysis, and cognitive/meta tools.

K-Dense's scientific writing toolkit: 23 skills (papers, grants, posters, clinical reports, paper-2-web) plus a /scientific-writer-init command. NOTE: 22 of these 23 skills also appear in sci-* plugins; only paper-2-web is unique to the writer. To avoid duplicate skills, install EITHER claude-scientific-writer OR the relevant sci-* plugins, not both.