By galeep
Discrete-event simulation, multi-objective optimization, CFD, and molecular dynamics.
Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC support, and comprehensive output analysis.
Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis. Set up protein/small molecule systems, define force fields, run energy minimization and production MD, analyze trajectories (RMSD, RMSF, contact maps, free energy surfaces). For structural biology, drug binding, and biophysics.
Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT, DTLZ), for engineering design and optimization problems.
Process-based discrete-event simulation framework in Python. Use this skill when building simulations of systems with processes, queues, resources, and time-based events such as manufacturing systems, service operations, network traffic, logistics, or any system where entities interact with shared resources over time.
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A curated Claude Code plugin marketplace. Currently hosts K-Dense AI's scientific tooling split into focused, individually-installable plugins so you only load what you need.
# Add the marketplace (one time)
claude plugin marketplace add galeep/plugin-place
# List what's available
claude plugin search @plugin-place
# Install whichever pieces you want
claude plugin install sci-bioinformatics-genomics@plugin-place
claude plugin install sci-machine-learning@plugin-place
claude plugin install kdense-document-skills@plugin-place
19 plugins, 135 skills, all sourced from K-Dense AI and licensed MIT. Two upstream repos vendor in, pinned to release tags:
v2.38.0 — 135 scientific skills, split here into 17 domain plugins
plus the general-purpose kdense-document-skills pluginv2.13.0 — full writer plugin with a /scientific-writer-init command| Plugin | Skills | What it covers |
|---|---|---|
sci-bioinformatics-genomics | 20 | Sequence analysis, scRNA-seq, gene regulatory networks, variants, phylogenetics, biomedical DBs |
sci-cheminformatics-drug-discovery | 9 | Cheminformatics, molecular ML, docking, medicinal chemistry |
sci-proteomics-mass-spec | 3 | LC-MS/MS, spectral matching, glycoengineering |
sci-clinical-research | 4 | CDS, clinical/case/trial reports, treatment plans, ISO 13485 |
sci-healthcare-ai | 2 | PyHealth, NeuroKit2 biosignal processing |
sci-medical-imaging | 4 | DICOM, WSI, computational pathology, NCI Imaging Data Commons |
sci-machine-learning | 16 | scikit-learn, Lightning, transformers, RL, time series, GNNs, Bayesian, SHAP, GPU/compute helpers |
sci-materials-chemistry | 2 | pymatgen, COBRApy |
sci-physics-astronomy | 6 | astropy, sympy, qutip, qiskit, cirq, pennylane |
sci-engineering-simulation | 4 | SimPy, pymoo, CFD, molecular dynamics |
sci-data-analysis-viz | 14 | Stats, EDA, networks, survival, plotting, big-data dataframes, MATLAB, US fiscal data |
sci-geospatial | 2 | GIS, remote sensing, earth-observation ML |
sci-lab-automation | 11 | Benchling, DNAnexus, LatchBio, OMERO, Opentrons, protocols.io, PyLabRobot, flow cytometry, Neuropixels |
sci-scientific-communication | 22 | Lit review, peer review, writing, citations, posters, slides, schematics, infographics, academic web search |
sci-multi-omics | 3 | DepMap, PrimeKG, scvi-tools |
sci-protein-engineering | 2 | ESM, Adaptyv Bio Foundry |
sci-research-methodology | 7 | Hypothesis generation, grant writing, brainstorming, critical thinking, scenario analysis |
kdense-document-skills | 4 | General-purpose .docx, .pdf, .pptx, .xlsx tools (useful with any plugin) |
claude-scientific-writer | 23 | K-Dense's full writer plugin including the /scientific-writer-init command |
The claude-scientific-writer plugin and the sci-* plugins share most of
their skills (K-Dense maintains the same skill code in both upstreams).
Specifically:
sci-* plugins
(mostly sci-scientific-communication, plus sci-clinical-research and
sci-research-methodology)/scientific-writer-init slash
command (which the bare skills lack)Pick one approach:
sci-* plugins: get exactly the domain slices
you want, granular enable/disableInstalling both will give you duplicate skill names, which is unsupported and will confuse Claude Code's skill router.
plugins.yaml is the source of truth. Everything else is generated:
git submodule update --init --recursive
bash scripts/build.sh
This regenerates plugins/* and .claude-plugin/marketplace.json from
the YAML and the pinned upstream submodules. The build is idempotent —
edits inside plugins/* will be overwritten.
The built plugin kind copies a chosen subset of skills from an upstream
submodule. The vendored plugin kind copies an entire upstream plugin
intact (skills, commands, agents, hooks) and generates a plugin.json
from its upstream marketplace metadata. A local kind is reserved for
plugins authored directly in this repo.
To add a new plugin, edit plugins.yaml and rerun scripts/build.sh.
npx claudepluginhub galeep/plugin-place --plugin sci-engineering-simulationClinical decision support, clinical/case/trial reports, treatment plans, and ISO 13485 QMS docs.
Sequence analysis, single-cell RNA-seq, gene regulatory networks, variant data, phylogenetics, and biomedical database lookup.
Cheminformatics, molecular ML featurization, docking, and medicinal chemistry workflows.
LC-MS/MS processing, spectral matching, peptide ID, and glycoengineering.
EHR/physiological-signal ML: PyHealth pipelines and NeuroKit2 biosignal processing.
UI/UX design intelligence. 67 styles, 161 palettes, 57 font pairings, 25 charts, 15 stacks (React, Next.js, Vue, Svelte, Astro, SwiftUI, React Native, Flutter, Tailwind, shadcn/ui, Nuxt, Jetpack Compose). Actions: plan, build, create, design, implement, review, fix, improve, optimize, enhance, refactor, check UI/UX code. Projects: website, landing page, dashboard, admin panel, e-commerce, SaaS, portfolio, blog, mobile app. Elements: button, modal, navbar, sidebar, card, table, form, chart. Styles: glassmorphism, claymorphism, minimalism, brutalism, neumorphism, bento grid, dark mode, responsive, skeuomorphism, flat design. Topics: color palette, accessibility, animation, layout, typography, font pairing, spacing, hover, shadow, gradient.
Comprehensive skill pack with 66 specialized skills for full-stack developers: 12 language experts (Python, TypeScript, Go, Rust, C++, Swift, Kotlin, C#, PHP, Java, SQL, JavaScript), 10 backend frameworks, 6 frontend/mobile, plus infrastructure, DevOps, security, and testing. Features progressive disclosure architecture for 50% faster loading.
This skill should be used when users need to generate ideas, explore creative solutions, or systematically brainstorm approaches to problems. Use when users request help with ideation, content planning, product features, marketing campaigns, strategic planning, creative writing, or any task requiring structured idea generation. The skill provides 30+ research-validated prompt patterns across 14 categories with exact templates, success metrics, and domain-specific applications.
Develop, test, build, and deploy Godot 4.x games with Claude Code. Includes GdUnit4 testing, web/desktop exports, CI/CD pipelines, and deployment to Vercel/GitHub Pages/itch.io.
Upstash Context7 MCP server for up-to-date documentation lookup. Pull version-specific documentation and code examples directly from source repositories into your LLM context.
A growing collection of Claude-compatible academic workflow bundles. Covers scientific figures, manuscript writing and polishing, reviewer assessment, citation retrieval, data availability, paper reading, literature search, response letters, paper-to-PPTX conversion, and evidence-grounded Chinese invention patent drafting. Rules are organized as reusable skill folders with explicit workflows and quality checks.