By galeep
General ML/DL: scikit-learn, PyTorch Lightning, transformers, RL, time series, GNNs, Bayesian, SHAP, plus GPU and compute helpers.
This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.
This skill should be used at the start of any computationally intensive scientific task to detect and report available system resources (CPU cores, GPUs, memory, disk space). It creates a JSON file with resource information and strategic recommendations that inform computational approach decisions such as whether to use parallel processing (joblib, multiprocessing), out-of-core computing (Dask, Zarr), GPU acceleration (PyTorch, JAX), or memory-efficient strategies. Use this skill before running analyses, training models, processing large datasets, or any task where resource constraints matter.
Use when the user is doing AI/ML work in a scientific domain — biology, chemistry, physics, astronomy, climate, genomics, materials science, medicine, ecology, energy, conservation, engineering, mathematics, scientific reasoning, drug discovery, protein design, weather modeling, theorem proving, single-cell, PDE solving, or anything similar. Hugging Science (huggingscience.co) is a curated catalog of scientific datasets, models, blog posts, and interactive Spaces; the `hugging-science` org on Hugging Face hosts community datasets, models, and demo Spaces. This skill helps you discover the right resource AND actually use it — loading datasets via `datasets`, running models via `transformers` or the HF Inference API, calling Spaces like BoltzGen via `gradio_client`, and citing blog posts for methodology. Trigger this skill whenever a user mentions a scientific ML task, asks for "a dataset/model for X" where X is a scientific topic, wants to fine-tune on scientific data, asks about protein / molecule / genome / climate / materials / astronomy / pathology / weather ML, or needs AI tools for research — even if they never say "Hugging Science" explicitly. The catalog is purpose-built for LLM agents (it ships an `llms-full.txt`); prefer it over generic web search for these tasks.
Automated LLM-driven hypothesis generation and testing on tabular datasets. Use when you want to systematically explore hypotheses about patterns in empirical data (e.g., deception detection, content analysis). Combines literature insights with data-driven hypothesis testing. For manual hypothesis formulation use hypothesis-generation; for creative ideation use scientific-brainstorming.
Cloud computing platform for running Python on GPUs and serverless infrastructure. Use when deploying AI/ML models, running GPU-accelerated workloads, serving web endpoints, scheduling batch jobs, or scaling Python code to the cloud. Use this skill whenever the user mentions Modal, serverless GPU compute, deploying ML models to the cloud, serving inference endpoints, running batch processing in the cloud, or needs to scale Python workloads beyond their local machine. Also use when the user wants to run code on H100s, A100s, or other cloud GPUs, or needs to create a web API for a model.
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A curated Claude Code plugin marketplace. Currently hosts K-Dense AI's scientific tooling split into focused, individually-installable plugins so you only load what you need.
# Add the marketplace (one time)
claude plugin marketplace add galeep/plugin-place
# List what's available
claude plugin search @plugin-place
# Install whichever pieces you want
claude plugin install sci-bioinformatics-genomics@plugin-place
claude plugin install sci-machine-learning@plugin-place
claude plugin install kdense-document-skills@plugin-place
19 plugins, 135 skills, all sourced from K-Dense AI and licensed MIT. Two upstream repos vendor in, pinned to release tags:
v2.38.0 — 135 scientific skills, split here into 17 domain plugins
plus the general-purpose kdense-document-skills pluginv2.13.0 — full writer plugin with a /scientific-writer-init command| Plugin | Skills | What it covers |
|---|---|---|
sci-bioinformatics-genomics | 20 | Sequence analysis, scRNA-seq, gene regulatory networks, variants, phylogenetics, biomedical DBs |
sci-cheminformatics-drug-discovery | 9 | Cheminformatics, molecular ML, docking, medicinal chemistry |
sci-proteomics-mass-spec | 3 | LC-MS/MS, spectral matching, glycoengineering |
sci-clinical-research | 4 | CDS, clinical/case/trial reports, treatment plans, ISO 13485 |
sci-healthcare-ai | 2 | PyHealth, NeuroKit2 biosignal processing |
sci-medical-imaging | 4 | DICOM, WSI, computational pathology, NCI Imaging Data Commons |
sci-machine-learning | 16 | scikit-learn, Lightning, transformers, RL, time series, GNNs, Bayesian, SHAP, GPU/compute helpers |
sci-materials-chemistry | 2 | pymatgen, COBRApy |
sci-physics-astronomy | 6 | astropy, sympy, qutip, qiskit, cirq, pennylane |
sci-engineering-simulation | 4 | SimPy, pymoo, CFD, molecular dynamics |
sci-data-analysis-viz | 14 | Stats, EDA, networks, survival, plotting, big-data dataframes, MATLAB, US fiscal data |
sci-geospatial | 2 | GIS, remote sensing, earth-observation ML |
sci-lab-automation | 11 | Benchling, DNAnexus, LatchBio, OMERO, Opentrons, protocols.io, PyLabRobot, flow cytometry, Neuropixels |
sci-scientific-communication | 22 | Lit review, peer review, writing, citations, posters, slides, schematics, infographics, academic web search |
sci-multi-omics | 3 | DepMap, PrimeKG, scvi-tools |
sci-protein-engineering | 2 | ESM, Adaptyv Bio Foundry |
sci-research-methodology | 7 | Hypothesis generation, grant writing, brainstorming, critical thinking, scenario analysis |
kdense-document-skills | 4 | General-purpose .docx, .pdf, .pptx, .xlsx tools (useful with any plugin) |
claude-scientific-writer | 23 | K-Dense's full writer plugin including the /scientific-writer-init command |
The claude-scientific-writer plugin and the sci-* plugins share most of
their skills (K-Dense maintains the same skill code in both upstreams).
Specifically:
sci-* plugins
(mostly sci-scientific-communication, plus sci-clinical-research and
sci-research-methodology)/scientific-writer-init slash
command (which the bare skills lack)Pick one approach:
sci-* plugins: get exactly the domain slices
you want, granular enable/disableInstalling both will give you duplicate skill names, which is unsupported and will confuse Claude Code's skill router.
plugins.yaml is the source of truth. Everything else is generated:
git submodule update --init --recursive
bash scripts/build.sh
This regenerates plugins/* and .claude-plugin/marketplace.json from
the YAML and the pinned upstream submodules. The build is idempotent —
edits inside plugins/* will be overwritten.
The built plugin kind copies a chosen subset of skills from an upstream
submodule. The vendored plugin kind copies an entire upstream plugin
intact (skills, commands, agents, hooks) and generates a plugin.json
from its upstream marketplace metadata. A local kind is reserved for
plugins authored directly in this repo.
To add a new plugin, edit plugins.yaml and rerun scripts/build.sh.
npx claudepluginhub galeep/plugin-place --plugin sci-machine-learningClinical decision support, clinical/case/trial reports, treatment plans, and ISO 13485 QMS docs.
Sequence analysis, single-cell RNA-seq, gene regulatory networks, variant data, phylogenetics, and biomedical database lookup.
Cheminformatics, molecular ML featurization, docking, and medicinal chemistry workflows.
LC-MS/MS processing, spectral matching, peptide ID, and glycoengineering.
EHR/physiological-signal ML: PyHealth pipelines and NeuroKit2 biosignal processing.
Ultra-compressed communication mode. Cuts ~75% of tokens while keeping full technical accuracy by speaking like a caveman.
UI/UX design intelligence. 67 styles, 161 palettes, 57 font pairings, 25 charts, 15 stacks (React, Next.js, Vue, Svelte, Astro, SwiftUI, React Native, Flutter, Tailwind, shadcn/ui, Nuxt, Jetpack Compose). Actions: plan, build, create, design, implement, review, fix, improve, optimize, enhance, refactor, check UI/UX code. Projects: website, landing page, dashboard, admin panel, e-commerce, SaaS, portfolio, blog, mobile app. Elements: button, modal, navbar, sidebar, card, table, form, chart. Styles: glassmorphism, claymorphism, minimalism, brutalism, neumorphism, bento grid, dark mode, responsive, skeuomorphism, flat design. Topics: color palette, accessibility, animation, layout, typography, font pairing, spacing, hover, shadow, gradient.
Frontend design skill for UI/UX implementation
Comprehensive skill pack with 66 specialized skills for full-stack developers: 12 language experts (Python, TypeScript, Go, Rust, C++, Swift, Kotlin, C#, PHP, Java, SQL, JavaScript), 10 backend frameworks, 6 frontend/mobile, plus infrastructure, DevOps, security, and testing. Features progressive disclosure architecture for 50% faster loading.
This skill should be used when users need to generate ideas, explore creative solutions, or systematically brainstorm approaches to problems. Use when users request help with ideation, content planning, product features, marketing campaigns, strategic planning, creative writing, or any task requiring structured idea generation. The skill provides 30+ research-validated prompt patterns across 14 categories with exact templates, success metrics, and domain-specific applications.
Develop, test, build, and deploy Godot 4.x games with Claude Code. Includes GdUnit4 testing, web/desktop exports, CI/CD pipelines, and deployment to Vercel/GitHub Pages/itch.io.