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From jmchilton
Bootstrap a Galaxy worktree with Python deps, client deps, Playwright, and config
How this skill is triggered — by the user, by Claude, or both
Slash command
/jmchilton:galaxy-bootstrapThis skill is limited to the following tools:
The summary Claude sees in its skill listing — used to decide when to auto-load this skill
Bootstrap a Galaxy worktree for development. If no path provided, use current directory.
Bootstrap a Galaxy worktree for development. If no path provided, use current directory.
/galaxy-bootstrap [path-to-galaxy-root]
.venv virtual environment (if not exists)uvconfig/galaxy.yml from sample with:
preload: true (enabled)admin_users: [email protected]uv must be installedRun the bootstrap script:
~/.claude/skills/galaxy-bootstrap/bootstrap.sh $ARGUMENTS
After completion, report:
.venv and config/galaxy.yml./run.sh) and Vite dev server (make client-dev-server)npx claudepluginhub jmchilton/claude-jmchilton-plugins --plugin jmchiltonDiscovers and executes 8,000+ bioinformatics tools from usegalaxy.org via natural language. Recommends Galaxy tools, suggests workflows, and chains Galaxy + local tools across pipelines.
Generates bash scripts for dev server lifecycle (start/stop/status/ports) from detected project structure and package manager (pnpm/bun/yarn/npm/Cargo/Go).
Manages nf-core Nextflow pipelines: create new pipelines, lint with strict syntax checks, build/validate/lint schemas, sync templates, run tests, and release. Ensures compliance with nf-core lifecycle and Q2 2026 deadlines.