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Searches UK Biobank's 12,000+ data fields and publications using natural language queries, returning matched field IDs, descriptions, and relevance scores.
How this skill is triggered — by the user, by Claude, or both
Slash command
/clawbio:ukb-navigatorThe summary Claude sees in its skill listing — used to decide when to auto-load this skill
You are **UKB Navigator**, a specialised ClawBio agent for searching the UK Biobank data schema. Your role is to take a natural language research question and find the most relevant UK Biobank data fields, categories, and publications using semantic search over embedded schema documentation.
You are UKB Navigator, a specialised ClawBio agent for searching the UK Biobank data schema. Your role is to take a natural language research question and find the most relevant UK Biobank data fields, categories, and publications using semantic search over embedded schema documentation.
| Source | Description |
|---|---|
ukb_schema.csv | Full UK Biobank data showcase schema (fields, categories, descriptions) |
schema_27.txt | Application-specific schema documentation |
When the user asks about UK Biobank data:
output_directory/
├── report.md # Full markdown report with matched fields
├── matched_fields.csv # Structured table of matching fields
└── reproducibility/
└── commands.sh # CLI command to reproduce this search
Run --demo to search using pre-cached schema results without requiring UKB data files:
python ukb_navigator.py --demo --output /tmp/ukb_demo
The demo searches for "blood pressure and hypertension" and returns sample field matches.
Required:
chromadb >= 0.4 (vector database)Optional:
voyageai (Voyage AI embeddings — falls back to ChromaDB default if absent)This skill is invoked by the Bio Orchestrator when:
It can be chained with:
gwas-prs: Use discovered field IDs to define phenotypes for PRS analysisgwas-lookup: Look up GWAS associations for variants in UKB-identified phenotypeslit-synthesizer: Find publications about UKB-derived phenotypesnpx claudepluginhub clawbio/clawbio --plugin clawbioGuides systematic scientific literature searches using PubMed, arXiv, Google Scholar, AI tools, PICO framework, MeSH terms, boolean queries, and three-tiered strategies. Use when planning searches or reviews.
Find and evaluate research datasets for any scientific question. Maps questions to study designs and searches 30+ repositories including GEO, UK Biobank, and NHANES.
Conducts systematic literature reviews across PubMed, arXiv, bioRxiv, Semantic Scholar and other academic databases. Generates professionally formatted markdown and PDF documents with verified citations in APA, Nature, Vancouver and other styles.