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Submits and tracks experiments on the Adaptyv cloud laboratory platform for automated protein testing and wet-lab validation, and optimizes protein sequences for expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM).
How this skill is triggered — by the user, by Claude, or both
Slash command
/alterlab-writing-tools:alterlab-adaptyvThis skill is limited to the following tools:
The summary Claude sees in its skill listing — used to decide when to auto-load this skill
Adaptyv is a cloud laboratory platform that provides automated protein testing and validation services. Submit protein sequences via API or web interface and receive experimental results in approximately 21 days.
Adaptyv is a cloud laboratory platform that provides automated protein testing and validation services. Submit protein sequences via API or web interface and receive experimental results in approximately 21 days.
Adaptyv requires API authentication. Set up your credentials:
export ADAPTYV_API_KEY="your_api_key_here"
Or create a .env file:
ADAPTYV_API_KEY=your_api_key_here
Install the required package using uv:
uv pip install requests python-dotenv
Submit protein sequences for testing:
import os
import requests
from dotenv import load_dotenv
load_dotenv()
api_key = os.getenv("ADAPTYV_API_KEY")
base_url = "https://kq5jp7qj7wdqklhsxmovkzn4l40obksv.lambda-url.eu-central-1.on.aws"
headers = {
"Authorization": f"Bearer {api_key}",
"Content-Type": "application/json"
}
# Submit experiment
response = requests.post(
f"{base_url}/experiments",
headers=headers,
json={
"sequences": ">protein1\nMKVLWALLGLLGAA...",
"experiment_type": "binding",
"webhook_url": "https://your-webhook.com/callback"
}
)
experiment_id = response.json()["experiment_id"]
Adaptyv supports multiple assay types:
See reference/experiments.md for detailed information on each experiment type and workflows.
Before submitting sequences, optimize them for better expression and stability:
Common issues to address:
Recommended tools:
See reference/protein_optimization.md for detailed optimization workflows and tool usage.
For complete API documentation including all endpoints, request/response formats, and authentication details, see reference/api_reference.md.
For concrete code examples covering common use cases (experiment submission, status tracking, result retrieval, batch processing), see reference/examples.md.
npx claudepluginhub alterlab-ieu/alterlab-academic-skills --plugin alterlab-visualizationSubmits protein sequences to Adaptyv cloud lab for automated binding, expression, thermostability, and enzyme activity assays. Also optimizes sequences using NetSolP, SoluProt, SolubleMPNN, and ESM before wet-lab validation.
Submits protein sequences via Python SDK for cell-free expression (10–100 µg) and binding affinity (KD) assays against targets. Tracks status and retrieves results for ML-guided directed evolution and antibody/nanobody optimization.
Submits and manages protocols on Ginkgo Bioworks Cloud Lab for cell-free protein expression (validation/optimization) and fluorescent pixel art generation. Use when ordering lab services or interacting with cloud.ginkgo.bio.