By bcmcpher
Language-agnostic statistical analysis workflows: merge input data into an analysis-ready dataframe, select and plan the right statistical test with QC checks, and scaffold a jupytext report.
User has a merged or analysis-ready tabular file and wants to generate a BIDS-style JSON data dictionary that annotates every variable. Use this skill whenever the user asks to document, annotate, or describe the variables in a dataframe or TSV/CSV file, wants to create a data dictionary or codebook, or needs BIDS-compliant variable metadata for a merged dataset.
User has completed or planned a statistical analysis and wants to scaffold a jupytext report notebook with standard sections, QC diagnostic plots, model summary tables, and result figures. Use this skill whenever the user wants to start writing up results, needs a notebook template for a statistical analysis, or wants to turn plan-analysis model hierarchy output into a reportable format. Also invoke when the user asks for an analysis notebook, report script, or structured write-up.
User has a folder of tabular data files (.csv/.tsv/.xlsx/etc.) and wants to inspect, merge, and combine them into a single analysis-ready dataframe with a runnable script. Use this skill whenever the user mentions merging, joining, or combining data files, wants to produce an analysis-ready dataset from multiple spreadsheets or data exports, or asks how to load and integrate a collection of tabular files.
User describes a research question — what they're trying to predict or explain, what variables are involved, and what the study design looks like — and wants a recommended statistical model with a hierarchical test sequence from null to fully specified. Use this skill whenever the user asks which statistical test or model to use, wants to plan an analysis, needs help choosing between ANOVA/regression/mixed effects/CCA/factor analysis, or describes outcome and predictor variables and wants a structured modelling approach.
Uses power tools
Uses Bash, Write, or Edit tools
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Personal monorepo for developing Claude Code plugins — skills (slash commands), subagents,
hooks, and MCP server configs. Each plugin under plugins/ is independently installable.
# Test locally during development (session-only)
claude --plugin-dir ./plugins/<name>
# Install permanently (user scope)
claude plugin install ./plugins/<name>
# Install from GitHub (when a plugin has its own repo)
claude plugin install https://github.com/bcmcpher/<plugin-name>
| Plugin | Description |
|---|---|
| example-hello | Working example: /hello skill + greeter subagent |
| boutiques | /boutiques <cmd> [subcmd] — generate a Boutiques 0.5 JSON descriptor from --help output |
| testing | /tdd for test-first development; /retrofit-tests for adding coverage to existing code |
Start new tools by copying a template:
cp -r templates/skill plugins/my-new-skill
cp -r templates/agent plugins/my-new-agent
cp -r templates/plugin plugins/my-new-plugin
Then replace all PLUGIN_NAME, SKILL_NAME, AGENT_NAME placeholders with real names.
Each template includes a SETUP.md with detailed setup instructions — it's the first thing to read after copying and the last thing to replace with your own README.md.
| Template | Use when |
|---|---|
| templates/skill/ | Adding a slash command or auto-invoked instruction |
| templates/agent/ | Adding a specialized subagent with isolated context |
| templates/plugin/ | Full plugin: skills + agents + hooks + MCP server |
| If you want… | Use |
|---|---|
| A slash command or auto-triggered instruction set | templates/skill |
| A specialized subagent with its own context and policy | templates/agent |
| Both, plus hooks or MCP servers | templates/plugin |
Start with the smallest template that covers your need. You can always promote a skill to a full plugin later.
cp -r templates/skill plugins/my-new-skill # or agent / plugin
Then rename the placeholder directories inside:
mv plugins/my-new-skill/skills/SKILL_NAME plugins/my-new-skill/skills/my-new-skill
plugin.json)Open .claude-plugin/plugin.json and fill in every placeholder:
name — kebab-case slug, shown in listings and used internallydescription — one sentence; what does this plugin do?version — start at 0.1.0skills / agents — paths to your SKILL.md directories (update after renaming)Leave hooks and mcpConfig out of the manifest entirely if you're not using them.
For skills: the description frontmatter field is what Claude reads to decide when to auto-invoke the skill. Make it specific about the trigger condition and what the skill produces. The name field becomes the slash command (name: commit → /commit).
For agents: the description field is a delegation trigger — it describes when the main Claude should hand off work to this agent. The body of the file is the agent's system prompt; write it as a policy (purpose statement, explicit steps, hard constraints).
claude --plugin-dir ./plugins/my-new-skill
Inside the session, invoke your skill with /skill-name or describe a task that should trigger it. Edit SKILL.md, exit and relaunch to reload.
claude plugin install ./plugins/my-new-skill
Keep it in this monorepo while:
--plugin-dir path or GitHub subpathGraduate to a standalone repo when:
claude plugin install github.com/bcmcpher/<name># 1. Create the new repo and push the plugin contents (not the whole monorepo)
gh repo create bcmcpher/<plugin-name> --public --clone
cp -r plugins/<plugin-name>/. <plugin-name>/
cd <plugin-name> && git add . && git init && git commit -m "initial commit"
git remote add origin https://github.com/bcmcpher/<plugin-name>
git push -u origin main
Then in the new repo:
npx claudepluginhub bcmcpher/my-skills --plugin stat-analysisScaffold and configure new projects for use with Claude Code — project structure, environment setup, and Claude-specific tooling for coding tools, data analysis, and information management.
BIDS (Brain Imaging Data Structure) conventions — naming rules, entity ordering, sidecar fields, and dataset structure for neuroimaging datasets.
Generate a Boutiques JSON descriptor for a CLI tool by inspecting its --help output
Git workflow best practices and PR lifecycle commands for Claude Code sessions: when to use worktrees vs branches, commit conventions, parallel-agent coordination, conflict resolution, and slash commands for commit, push, PR creation, PR review, and branch cleanup.
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