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Copy this JSON into your .mcp.json to enable this server
Add to your .mcp.json:
{
"mcpServers": {
"pymol-mcp": {
"command": "uv",
"args": [
"run",
"${CLAUDE_PLUGIN_ROOT}/pymol_mcp_server.py"
],
"env": {
"PYTHONUNBUFFERED": "1"
}
}
}
}Review these signals before enabling this server
This server has elevated permissions. Review the source code before enabling.
Server configuration and connection parameters
uvCommand-line arguments passed to the server process
Environment variables set when the server starts
PYTHONUNBUFFERED=1npx claudepluginhub aeghnnsw/cc-toolkit --plugin pymol-skills