Bruno de Medeiros' curated collection of custom Claude skills for enhanced reasoning, deeper analysis, bioinformatics, and accounting
npx claudepluginhub brunoasm/my_claude_skillsBioinformatics skills
brunoasmCustom Claude skills for enhanced reasoning, bioinformatics, accounting, and natural history museum workflows. Each skill is a self-contained module bundled into installable plugins.
| Skill | Description |
|---|---|
| think-deeply | Enforces multi-perspective analysis instead of automatic agreement/disagreement. Activates on confirmation-seeking questions, leading statements, and binary choices. Docs → |
| extract-from-pdfs | 8-step pipeline for extracting structured data from scientific PDFs using Claude's vision. Supports abstract filtering (Ollama/Haiku/Sonnet), external validation (GBIF, WFO, GeoNames, PubChem, NCBI), and export to multiple formats. Docs → |
| accounting | Processes procurement card receipts, tracks expenses in Google Sheets, reconciles records, and generates entertainment supplement tables. Docs → |
| Skill | Description |
|---|---|
| phylo-from-buscos | Generates phylogenomic workflows from genome assemblies using BUSCO/compleasm single-copy orthologs. Supports NCBI accessions, multiple schedulers (SLURM, PBS, local), concatenated and coalescent phylogenies. Docs → |
| biogeobears | Sets up BioGeoBEARS biogeographic analyses in R. Validates inputs, generates RMarkdown scripts, compares DEC/DIVALIKE/BAYAREALIKE models, and produces publication-ready ancestral range visualizations. Docs → |
| Skill | Description |
|---|---|
| emu-bulk-upload | Helps FMNH entomology curators bulk upload specimen data to the Emu database. Matches localities to existing records, creates new site records, and generates formatted upload tables. Docs → |
| entomological-labels | Generates print-ready entomological specimen labels (.docx) from any tabular data. Interactively maps data to Darwin Core, assists with abbreviation, and produces label sheets. Docs → |
The anthropic-skills/ directory contains Anthropic's official example skills as a git submodule, including skill-creator, document tools, and more.
These instructions work the same way in:
/plugins to open the visual manager)You only need to do this once:
/plugin marketplace add brunoasm/my_claude_skills
Install all plugins:
/plugin install general-skills@brunoasm/my_claude_skills
/plugin install bioinfo-skills@brunoasm/my_claude_skills
/plugin install museum-skills@brunoasm/my_claude_skills
Or install only the ones you want — each plugin is independent.
git clone --recurse-submodules https://github.com/brunoasm/my_claude_skills.git
cd my_claude_skills
Then in Claude Code:
/plugin marketplace add .
/plugin install general-skills@.
When installing, Claude Code will ask you to choose a scope:
.claude/settings.jsonTo get the Anthropic example skills submodule:
git clone --recurse-submodules https://github.com/brunoasm/my_claude_skills.git
If you already cloned without it:
git submodule update --init --recursive