/reindex

/reindex — wipe wiki, re-index codebase

Purge the wiki vault, then re-index the entire codebase via the wiki MCP service.

Steps

1. Confirm with user before wiping. Wipe is irreversible — destroys all thoughts, entities, reasons, conclusions, purposes.

2. Purge .wiki/ vault (keep .wiki/purposes/ definitions if user wants — ask):

   • Default (full wipe): rm -rf .wiki/thoughts .wiki/entities .wiki/reasons .wiki/conclusions .wiki/questions .wiki/ingest
   • Recreate empty .wiki/ingest/ after.

3. Read .claude/tools/wiki/INGEST_FLOW.md for current ingest semantics.

4. Walk codebase — collect source files. Skip:

   • target/, node_modules/, dist/, build/, .git/
   • .wiki/, .claude/tools/wiki/target/
   • binaries, lockfiles, generated artifacts

5. For each source file call ingest_thought({title: <relpath>, content: <file body>}). Auto-chunking handles multi-purpose splits.

6. Periodically (every ~25 files) run search_fulltext for emerging clusters; promote 3+ similar thoughts to entities via ingest_entity.

7. After batch run /learn (ingest-time mode) on the new doc IDs to wikilink mentions and dedupe.

Notes

• Large repos: batch by directory. Report progress after each batch.
• Respect OPENAI_API_KEY — without it everything falls into general purpose.
• Do not re-purge mid-run if interrupted; resume from .wiki/ingest/ state.